PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G064100.4
Common NameB456_008G064100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 143aa    MW: 15775.6 Da    PI: 7.7939
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G064100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box254e-08433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+ +++ fC  ++  lC+ C ++ H
  Gorai.008G064100.4  4 LCDACESAPAIVFCAADEAALCRACDEKVH 33
                        6**************************998 PP

2zf-B_box28.53.1e-095292238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                        + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H 
  Gorai.008G064100.4 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtHG 92
                        6799***************************9966566675 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.352147IPR000315B-box-type zinc finger
CDDcd000213.82E-6345No hitNo description
PfamPF006431.6E-6442IPR000315B-box-type zinc finger
SMARTSM003361.8E-7447IPR000315B-box-type zinc finger
SuperFamilySSF578455.95E-54895No hitNo description
PROSITE profilePS501198.90251103IPR000315B-box-type zinc finger
SMARTSM003363.1E-115196IPR000315B-box-type zinc finger
PfamPF006433.2E-75291IPR000315B-box-type zinc finger
CDDcd000211.34E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MRILCDACES APAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRNLLLRQR VEVCYLISVK ILGHKFPPGV  120
LMCHWNLISR PLYSFQGINL LI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436832.18e-69PREDICTED: B-box zinc finger protein 18-like isoform X1
RefseqXP_012436833.12e-69PREDICTED: B-box zinc finger protein 19-like isoform X2
SwissprotC0SVM55e-63BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D2RAM81e-101A0A0D2RAM8_G
STRINGVIT_03s0038g00690.t011e-63(Vitis vinifera)
STRINGPOPTR_0007s13830.15e-64(Populus trichocarpa)
STRINGGLYMA01G37370.16e-64(Glycine max)
STRINGGLYMA11G07930.18e-64(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-64DBB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]